Course Modules

Class topics and schedule

Class topics and schedule Class topics and schedule

Attachment

MLCB23 Class topics.pdf MLCB23 Class topics.pdf 1

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

syllabus2023.pdf syllabus2023.pdf 2

attachment 944730 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Lectures

Lectures Lectures

Attachment

Lecture01_Introduction_FA23.pdf Lecture01_Introduction_FA23.pdf 1

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Attachment

Lecture02_ExpressionClusteringClassification.pdf Lecture02_ExpressionClusteringClassification.pdf 2

attachment 944812 0

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Attachment

Lecture03_DynamicProgramming+BLAST.pdf Lecture03_DynamicProgramming+BLAST.pdf 3

attachment 946599 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

Lecture04_Epigenomics_HMMs.pdf Lecture04_Epigenomics_HMMs.pdf 4

attachment 949248 0

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Attachment

Lecture05a_RegulatoryGenomics_TRIM.pdf Lecture05a_RegulatoryGenomics_TRIM.pdf 5

attachment 950520 0

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Attachment

Lecture06_MolecularModeling.pdf Lecture06_MolecularModeling.pdf 6

attachment 952549 0

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Attachment

Lecture07_MolecularModeling+GenerativeModels.pdf Lecture07_MolecularModeling+GenerativeModels.pdf 7

attachment 954480 0

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Attachment

Lecture08_ProteinLanguageModels.pdf Lecture08_ProteinLanguageModels.pdf 8

attachment 956256 0

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Attachment

Lecture09_ProteinFolding.pdf Lecture09_ProteinFolding.pdf 9

attachment 957474 0

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Attachment

Lecture10_Docking.pdf Lecture10_Docking.pdf 10

attachment 959791 0

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Attachment

Lecture11_Genetics_GWAS_PRS_Mechanism.pdf Lecture11_Genetics_GWAS_PRS_Mechanism.pdf 11

attachment 962641 0

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Attachment

Lecture12_DiseaseMechanism_Circuitry_eQTLs_Heritability.pdf Lecture12_DiseaseMechanism_Circuitry_eQTLs_Heritability.pdf 12

attachment 963989 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

Lecture13_SingleCellGenomics2b.pdf Lecture13_SingleCellGenomics2b.pdf 13

attachment 966009 0

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Attachment

Lecture14_Networks1_InferenceAnalysis-v2.pdf Lecture14_Networks1_InferenceAnalysis-v2.pdf 14

attachment 970226 0

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Attachment

Lecture15_EHR_Biobanks.pdf Lecture15_EHR_Biobanks.pdf 15

attachment 970227 0

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Attachment

Lecture16_ComputerVision_Biology.pdf Lecture16_ComputerVision_Biology.pdf 16

attachment 971431 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

Lecture17_ComparativeGenomics.pdf Lecture17_ComparativeGenomics.pdf 17

attachment 973424 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

Lecture18a_Phylogenetics.pdf Lecture18a_Phylogenetics.pdf 18

attachment 974444 0

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Attachment

Lecture19_Evolution_part3.pdf Lecture19_Evolution_part3.pdf 19

attachment 977771 0

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Attachment

Lecture20_Immunology.pdf Lecture20_Immunology.pdf 20

attachment 985632 0

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Attachment

Lecture21_Metabolism.pdf Lecture21_Metabolism.pdf 21

attachment 994699 0

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Attachment

Lecture23_ProteinDesign.pdf Lecture23_ProteinDesign.pdf 22

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Psets

Psets Psets

Assignment

PSET1 PSET1 40 1

assignment 945676 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

PSET 2 PSET 2 28 2

assignment 958685 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

PSET 3 PSET 3 25 3

assignment 971493 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

PSET 4 PSET 4 16 4

assignment 972238 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Recitations

Recitations Recitations

External Url

Recitation2 Colab notebook Recitation2 Colab notebook 1

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External Url

Recitation2 slides Recitation2 slides 2

external_url 947426 0

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External Url

Student Profiles Student Profiles 3

external_url 947427 0

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Projects

Projects Projects

Attachment

PreviousPaperDescription_Template.docx PreviousPaperDescription_Template.docx 1

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

MLCB23.suggested_papers_list.xlsx MLCB23.suggested_papers_list.xlsx 2

attachment 950202 0

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Attachment

paper_summary_example1.pdf paper_summary_example1.pdf 3

attachment 950203 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

paper_summary_example2.pdf paper_summary_example2.pdf 4

attachment 950204 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

paper_summary_example3.pdf paper_summary_example3.pdf 5

attachment 950205 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

ProjectProposal_Template.docx ProjectProposal_Template.docx 6

attachment 962909 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Problem Set Solutions

Problem Set Solutions Problem Set Solutions

Attachment

PSET1_Solutions.ipynb PSET1_Solutions.ipynb 1

attachment 963419 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

PSET1_Solutions.pdf PSET1_Solutions.pdf 2

attachment 963420 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

PSET2_Solutions.pdf PSET2_Solutions.pdf 3

attachment 970988 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

PSET2_Solutions.ipynb PSET2_Solutions.ipynb 4

attachment 970989 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

PSET3_Solutions.pdf PSET3_Solutions.pdf 5

attachment 982919 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

PSET4_Solutions.pdf PSET4_Solutions.pdf 6

attachment 979824 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Quiz

Quiz Quiz

Attachment

Past_quiz_2021.pdf Past_quiz_2021.pdf 1

attachment 977409 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

LectureSlides_highlighted.pdf LectureSlides_highlighted.pdf 2

attachment 980971 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

Past_quiz_2021_solutions.pdf Past_quiz_2021_solutions.pdf 3

attachment 982104 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least Score at least % Must score at least % to complete this module item Scored at least % Module item has been completed by scoring at least % View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete